Data & Tools

Open resources from our laboratory

Interactive Data

Cardiac Secretome

An interactive visual web app to display secreted miRNA from hiPSC-derived cardiac cells.

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PubPular Protein Annotation

Popular protein ranking from custom PubMed query (With Maggie Lam Lab)

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Software Tools

JCAST

Junction centric alternative splicing translator

GitHub Documentation
PYTMT

Tandem mass tag intensity reporter and correction

GitHub Documentation
RIANA

Relative Isotope Abundance Analyzer

GitHub Documentation
SPLAT

Simultaneous proteome localization and turnover pipeline

GitHub Documentation

Data Sets

PXD002870 - Protein turnover in the mouse heart

A large dataset on protein turnover rates in mouse hearts

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PXD026354 - Aging heart and skeletal muscle proteomics

Mass spectrometry proteomics data on young and aging mouse heart and skeletal muscles

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PXD038054 - SPLAT (AC16 +/- ER stress)

Spatiotemporal proteomics data of human AC16 cells in normal, thapsigargin, and tunicamycin treatments

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PXD041386 - SPLAT (iPSC-CM +/- carfilzomib)

SPLAT (iPSC-CM +/- carfilzomib)

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PXD041982 - Human cardiac fibroblast proteome

Human cardiac fibroblast proteome

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PXD046669 - SPLAT (AC16 MS3 quantification)

SPLAT (AC16 MS3 quantification)

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Protocols

Heavy water labeling in cell culture

Protocol to measure protein turnover half-life in cultured cells using D2O labeling

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Measuring protein turnover with subcellular resolution

Protein turnover dynamics analysis with subcellular spatial resolution

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